API for MoseleyBioinformaticsLab/FTMS.peakCharacterization
Functionality for Detecting and Characterizing Peaks
| Global functions | |
|---|---|
| %>% | Man page |
| .get_scan_polarity | Man page Source code |
| .onLoad | Source code |
| .remove_attrs | Man page Source code |
| .to_data_frame | Man page Source code |
| CharacterizeMSPeaks | Man page |
| PeakPickingAnalysis | Man page |
| RawMS | Man page |
| Z | Source code |
| ZipMS | Man page |
| add_peak_list | Man page |
| add_to_zip | Man page Source code |
| anova_matrix_test | Man page Source code |
| anova_test | Man page Source code |
| area_sum_points | Man page Source code |
| basename_no_file_ext | Source code |
| basic_peak_center_intensity | Man page Source code |
| bootstrap_samples | Man page |
| calc_point_slopes | Man page Source code |
| calculate_density | Man page Source code |
| calculate_resolution_information | Source code |
| calculate_rsd | Man page Source code |
| characterize_peaks | Man page |
| check_for_zip | Man page Source code |
| check_frequency_r2 | Man page Source code |
| check_mz_frequency_order | Source code |
| check_zip_file | Man page Source code |
| choose_peak_points_area | Man page Source code |
| choose_peak_rsq | Man page Source code |
| cleanup | Man page |
| convert_found_peaks | Source code |
| convert_mz_frequency | Man page Source code |
| correct_mean | Man page Source code |
| correct_peak | Man page Source code |
| correct_peak_sd_height | Man page Source code |
| correct_variance | Man page Source code |
| correctly_round_numbers | Source code |
| count_raw_peaks | Man page Source code |
| create_frequency_regions | Man page Source code |
| create_value | Man page Source code |
| default_correct_offset_function | Man page Source code |
| default_offset_fit_function | Source code |
| default_offset_predict_function | Man page Source code |
| default_scan_filter | Man page Source code |
| default_sd_fit_function | Source code |
| default_sd_predict_function | Source code |
| define_peak_type | Man page Source code |
| disable_logging | Man page Source code |
| discover_frequency_offset | Source code |
| erf | Source code |
| every_scan_frequency | Man page Source code |
| exponential_fit | Man page Source code |
| exponential_fit_zeroint | Source code |
| exponential_predict | Man page Source code |
| exponential_predict_zeroint | Source code |
| extract | Man page Source code |
| extract_nonzero | Source code |
| extract_raw_method | Man page Source code |
| find_peaks | Man page Source code |
| find_peaks_diff | Man page Source code |
| find_signal_regions | Man page |
| fit_exponentials | Source code |
| fit_frequency_linear | Source code |
| fit_frequency_sr | Source code |
| fit_mz_s2 | Source code |
| frequency_models_scans | Source code |
| frequency_points_to_frequency_regions | Man page Source code |
| generate_contaminants | Source code |
| get_area_peak | Man page Source code |
| get_area_peak_rejslope | Man page Source code |
| get_cauchy_peak_info | Man page Source code |
| get_fitted_peak_info | Man page Source code |
| get_ms1_scans | Source code |
| get_ms_info | Man page Source code |
| get_mzml_header | Man page Source code |
| get_mzml_metadata | Man page Source code |
| get_peak_info | Man page Source code |
| get_raw_ms_metadata | Man page Source code |
| get_rsq_peak | Man page Source code |
| get_zip_raw_metdata | Source code |
| import_json | Man page Source code |
| import_raw_ms | Man page Source code |
| import_xcalibur | Man page Source code |
| indicate_standards_contaminents | Man page Source code |
| initialize_metadata_from_mzml | Man page Source code |
| initialize_zip_metadata | Man page Source code |
| integrate_model | Man page Source code |
| integrate_sides | Man page Source code |
| integration_based_area | Man page Source code |
| json_2_peak_list | Man page Source code |
| json_mzML_2_df | Man page Source code |
| linear_fit | Man page Source code |
| lists_2_json | Man page Source code |
| load_metadata | Man page Source code |
| loess_to_df | Man page Source code |
| log_memory | Man page Source code |
| log_message | Man page Source code |
| log_peaks | Man page Source code |
| log_with_min | Man page Source code |
| meta_export_json | Man page Source code |
| model_peak_center_intensity | Man page Source code |
| my_unzip | Source code |
| mz_frequency_interpolation | Man page Source code |
| mz_points_to_frequency_regions | Man page Source code |
| mz_scans_to_frequency | Man page Source code |
| mzml_to_zip | Man page Source code |
| parabolic_fit | Man page Source code |
| peak_info | Man page Source code |
| peak_info2 | Man page Source code |
| peak_list_2_json | Man page Source code |
| plot_peaks | Man page Source code |
| plot_raw_peaks | Man page Source code |
| plot_tic | Man page Source code |
| pracma_findpeaks | Man page Source code |
| predict_exponentials | Source code |
| predict_frequency_linear | Source code |
| predict_frequency_sr | Source code |
| predict_mz_s2 | Source code |
| predicted_frequency_r2 | Man page Source code |
| psi | Source code |
| r_squared | Man page Source code |
| raw_metadata_mzml | Man page Source code |
| raw_peak_intensity | Man page Source code |
| raw_peaks | Man page Source code |
| recalculate_offsets | Man page Source code |
| run_mzml_list | Man page Source code |
| sample_run_time | Man page Source code |
| save | Man page |
| scan_mzML | Man page Source code |
| scan_time_filter | Man page Source code |
| sd_ratio_fractions | Source code |
| set_internal_map | Man page Source code |
| show_progress | Man page Source code |
| show_temp_dir | Man page |
| split_region_by_peaks | Man page |
| ssr | Man page Source code |
| system_check | Man page Source code |
| test_peak_area | Man page Source code |
| test_peak_area_slope | Man page Source code |
| test_peak_rsq | Man page Source code |
| tic_normalization | Man page Source code |
| transform_residuals | Man page Source code |
| write_zip_file_metadata | Source code |
| zip_list_contents | Man page Source code |
| zip_ms | Man page Source code |
| zip_ms_from_mzml | Source code |
| zip_ms_from_zip | Source code |
