ZipMS: Represents the zip mass spec file

In MoseleyBioinformaticsLab/FTMS.peakCharacterization: Functionality for Detecting and Characterizing Peaks

Represents the zip mass spec file

Description

This reference class represents the zip mass spec file. It does this by providing objects for the zip file, the metadata, as well as various bits underneath such as the raw data and peak lists, and their associated metadata. Although it is possible to work with the ZipMS object directly, it is heavily recommended to use the AnalyzeMS object for carrying out the various steps of an analysis, including peak finding.

Usage

ZipMS

Format

An object of class R6ClassGenerator of length 25.

Value

ZipMS object

ZipMS Methods

use ?method-name to see more details about each individual method

zip_ms

make a new ZipMS

show_temp_dir

show where files are stored

save

save the file

cleanup

unlink the temp_directory

add_peak_list

add a Peaks to the data

ZipMS Data Members

zip_file

the zip file that was read in

metadata

the actual metadata for the file

metadata_file

the metadata file

raw_ms

a RawMS holding the raw data

peaks

a Peaks holding the peak analysis

id

the sample id

out_file

the file where data will be saved

See Also

AnalyzeMS

MoseleyBioinformaticsLab/FTMS.peakCharacterization documentation built on April 27, 2022, 3:32 a.m.