filter_scans_builtin: built in filter scan function

In MoseleyBioinformaticsLab/ScanCentricPeakCharacterization: Functionality for Characterizing Peaks in Mass Spectrometry in a Scan-Centric Manner

built in filter scan function

Description

built in filter scan function

Usage

filter_scans_builtin(sc_mzml)

Arguments

sc_mzml

the sc_mzml object

Details

This is the built in filtering and removing outliers function. It is based on the Moseley groups normal samples and experience. However, it does not reflect everyone's experience and needs. We expect that others have different use cases and needs, and therefore they should create their own function and use it appropriately.

Please examine this function and write your own as needed. It must take an SCMzml object, work on the scan_info slot, and then create a column with the name "keep" denoting which scans to keep. To view the current definition, you can do filter_scans_builtin

Value

SCmzml

MoseleyBioinformaticsLab/ScanCentricPeakCharacterization documentation built on March 29, 2024, 11:32 p.m.