term_conversion: Convert GBIF terms to NCBI terms

In MoultDB/moultdbtools: Create Custom Taxonomies Based on the NCBI Taxonomy and GBIF Backbone Taxonomy

Convert GBIF terms to NCBI terms

Description

Convert GBIF terms to NCBI terms

Usage

term_conversion(x)

Arguments

x	A tibble created with load_taxonomies() or load_population() or load_sample().

Details

This method converts GBIF terminology to NCBI terminology where there is no biological provenance for the difference. Specifically, "Animalia" is converted to "Metazoa", and "Plantae" is converted to "Viridiplantae".

Value

A tibble with converted terms. The tibble is furthermore annotated with the attribute converted=TRUE.

Examples

term_conversion(load_sample())

MoultDB/moultdbtools documentation built on Feb. 2, 2024, 5:21 p.m.