make_explorer_app: Create Minc Model Explorer App
In Mouse-Imaging-Centre/mincModelExplorer: Explore voxel wise linear models

Description Usage Arguments Value

Read in pydpiper files and directories and produce an appropriate app directory

make_explorer_app(title, pydpiper_dir, out_dir, metadata, defs,
  model_formula = Filenames ~ genotype,
  config_file = system.file("config.R", package = "mincModelExplorer"),
  blur_level = 0.2, input_file_col = "Filenames", relevels = c(genotype =
  "WT"), plot_choices = "genotype", label_data = NULL,
  study_average = NULL, mask = NULL, clobber = FALSE)

`title`	The name of the app
`out_dir`	Where to create the app directory
`metadata`	A file containing the data needed to fit models of absolute and relative jacobians. Can include a labels column indicating MAGeT labelled data files
`defs`	A definitions file
`model_formula`	The basic model to run
`blur_level`	For filtering pydpiper output
`relevels`	A named character vector of column_name = base_factor_level defaults to c("genotype" = "WT")
`plot_choices`	values to offer the use for plot choices
`label_data`	A file containing paths to MAGeT labelled data files
`study_average`	Where to find the final average, defaults to the nlin-3 average from pydpiper
`mask`	A mask to use for the analysis, defaults to the nlin-3 mask
`clobber`	whether to overwrite files in an existing app directory