| data.getMSEA_Metabolon | Metabolite set enrichment analysis (MSEA) using pathway... |
| data.HMDBtoKEGG | Convert HMDB IDs to KEGG compound IDs. |
| data.LabeltoKEGG | Convert compound names to KEGG compound IDs. |
| getPathwayIgraph | getPathwayIgraph |
| getPathwayMap | Get Pathway Map: Generate pathway map with patient data... |
| getPatientReport | Get Patient Report |
| plot.pathwayMap | Generate pathway map with patient perturbation data... |
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