getPatientReport: Get Patient Report
In NCBI-Hackathons/Metabolomics-Data-Portal: Metabolomics Data Portal

Description Usage Arguments Value Examples

Get Patient Report

1	getPatientReport(input, all_data)

`all_data`	- The entire data matrix loaded based on the diagnosis selected in the dropdown menu input$diagClass.
`PatientID`	- The patient identifier string associated with the patient's profile.

patientReport - a data table with the metabolites and z-scores associated with the selected patient ID.

data(Miller2015_Heparin)
# Input is supplied by R shiny app, but you can hard code parameters as a list object, too, to test functionality.
input = list()
input$ptIDs = colnames(Miller2015_Heparin)[4]
input$diagClass = "paa"
rpt = getPatientReport(input, Miller2015_Heparin)
head(rpt$patientReport)