Man pages for NCI-CGR/cgrtelomeres
Automated Processing of Telomere qPCR Data
| apply.Ct.filtering | Apply Ct filtering to PrimaryAnalysis intermediates based on... |
| cgrtelomeres-package | cgrtelomeres: Automated Processing of Telomere qPCR Data |
| compute.fit | Provided a standard curve, predict concentration from Ct |
| create.analysis | Create a PrimaryAnalysis from a loaded ExportDatum |
| create.output.directories | Create output directory structure if necessary |
| ExportDatum-class | Store aligned telomere and control data per experiment |
| extract.well.mappings | Map 96 to 384 wells using Plate List and Content Report data |
| find.input.files | Acquire input text files in (experiment, control) pairs |
| format.final.analysis | Make final report spreadsheet |
| PrimaryAnalysis | Constructor for primary analysis class |
| PrimaryAnalysis-class | Store primary analysis results, processed from ExportDatum |
| process.average | Compute replicate mean with restrictions |
| process.experiment | Process a CGR-style telomere qPCR experiment |
| process.standard.deviation | Compute replicate standard deviation with restrictions |
| read.export.datum | Read and align Cp data for telomeres and controls in an... |
| report.primary.analysis | Write PrimaryAnalysis object to file in simplified format |
