PrimaryAnalysis-class: Store primary analysis results, processed from ExportDatum
In NCI-CGR/cgrtelomeres: Automated Processing of Telomere qPCR Data
Description
Store primary analysis results, processed from ExportDatum
Slots
Analysis.Codecharacter vector describing alphabetic
analysis code A-H
Source.Well.IDfactor of well IDs from source data
Internal.Controlboolean vector of whether a sample is an
internal control
Source.Plate.IDcharacter vector of Intermediate Source Plate ID
Well.IDcharacter vector of source plate well ID
Sample.IDcharacter vector of sample ID
Vial.IDcharacter vector of vial ID
Rep1.Wellfactor of 384 well plate locations for each first replicate
Rep2.Wellfactor of 384 well plate locations for each second replicate
Rep3.Wellfactor of 384 well plate locations for each third replicate
Rep1.ExperimentalCt.prefilternumeric vector of raw telomeric
Ct values for each first replicate
Rep2.ExperimentalCt.prefilternumeric vector of raw telomeric
Ct values for each second replicate
Rep3.ExperimentalCt.prefilternumeric vector of raw telomeric
Ct values for each third replicate
Rep1.ControlCt.prefilternumeric vector of raw control Ct
values for each first replicate
Rep2.ControlCt.prefilternumeric vector of raw control Ct
values for each second replicate
Rep3.ControlCt.prefilternumeric vector of raw control Ct
values for each third replicate
Rep1.ExperimentalCt.postfilternumeric vector of post-filtering
telomeric Ct values for each first replicate
Rep2.ExperimentalCt.postfilternumeric vector of post-filtering
telomeric Ct values for each second replicate
Rep3.ExperimentalCt.postfilternumeric vector of post-filtering
telomeric Ct values for each third replicate
Rep1.ControlCt.postfilternumeric vector of post-filtering
control Ct values for each first replicate
Rep2.ControlCt.postfilternumeric vector of post-filtering
control Ct values for each second replicate
Rep3.ControlCt.postfilternumeric vector of post-filtering
control Ct values for each third replicate
Avg.ExperimentalCtnumeric vector of mean post-filtering
telomeric Ct values
SD.ExperimentalCtnumeric vector of standard deviation of
post-filtering telomeric Ct values
PerCV.ExperimentalCtnumeric vector of
post-filtering telomeric Ct values
Avg.ControlCtnumeric vector of mean post-filtering control Ct values
SD.ControlCtnumeric vector of standard deviation of post-filtering
control Ct values
PerCV.ControlCtnumeric vector of post-filtering
control Ct values
Model.Experimentobject of class lm, fit model for telomeric data
Model.Controlobject of class lm, fit model for control data
Fit.ExperimentalConcnumeric vector of exponential fit values
from standard curve for telomeric data
Fit.ControlConcnumeric vector of exponential fit values from
standard curve for control data
TS.Rationumeric vector of ratio of telomeric to control fit
Normalized.TSnumeric vector of TS ratio normalized to controls
Examples
1
new("PrimaryAnalysis")
NCI-CGR/cgrtelomeres documentation built on Feb. 11, 2021, 12:12 p.m.
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Description
Store primary analysis results, processed from ExportDatum
Slots
Analysis.Codecharacter vector describing alphabetic analysis code A-H
Source.Well.IDfactor of well IDs from source data
Internal.Controlboolean vector of whether a sample is an internal control
Source.Plate.IDcharacter vector of Intermediate Source Plate ID
Well.IDcharacter vector of source plate well ID
Sample.IDcharacter vector of sample ID
Vial.IDcharacter vector of vial ID
Rep1.Wellfactor of 384 well plate locations for each first replicate
Rep2.Wellfactor of 384 well plate locations for each second replicate
Rep3.Wellfactor of 384 well plate locations for each third replicate
Rep1.ExperimentalCt.prefilternumeric vector of raw telomeric Ct values for each first replicate
Rep2.ExperimentalCt.prefilternumeric vector of raw telomeric Ct values for each second replicate
Rep3.ExperimentalCt.prefilternumeric vector of raw telomeric Ct values for each third replicate
Rep1.ControlCt.prefilternumeric vector of raw control Ct values for each first replicate
Rep2.ControlCt.prefilternumeric vector of raw control Ct values for each second replicate
Rep3.ControlCt.prefilternumeric vector of raw control Ct values for each third replicate
Rep1.ExperimentalCt.postfilternumeric vector of post-filtering telomeric Ct values for each first replicate
Rep2.ExperimentalCt.postfilternumeric vector of post-filtering telomeric Ct values for each second replicate
Rep3.ExperimentalCt.postfilternumeric vector of post-filtering telomeric Ct values for each third replicate
Rep1.ControlCt.postfilternumeric vector of post-filtering control Ct values for each first replicate
Rep2.ControlCt.postfilternumeric vector of post-filtering control Ct values for each second replicate
Rep3.ControlCt.postfilternumeric vector of post-filtering control Ct values for each third replicate
Avg.ExperimentalCtnumeric vector of mean post-filtering telomeric Ct values
SD.ExperimentalCtnumeric vector of standard deviation of post-filtering telomeric Ct values
PerCV.ExperimentalCtnumeric vector of post-filtering telomeric Ct values
Avg.ControlCtnumeric vector of mean post-filtering control Ct values
SD.ControlCtnumeric vector of standard deviation of post-filtering control Ct values
PerCV.ControlCtnumeric vector of post-filtering control Ct values
Model.Experimentobject of class lm, fit model for telomeric data
Model.Controlobject of class lm, fit model for control data
Fit.ExperimentalConcnumeric vector of exponential fit values from standard curve for telomeric data
Fit.ControlConcnumeric vector of exponential fit values from standard curve for control data
TS.Rationumeric vector of ratio of telomeric to control fit
Normalized.TSnumeric vector of TS ratio normalized to controls
Examples
1 | new("PrimaryAnalysis")
|
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