HumanGWAS: Example Dataset: Human GWAS

In NESCent/MINOTAUR: MultIvariate visualisatioN and OuTlier Analysis Using R

Description

This dataset contains an example of output returned from a human Genome-Wide Association Study (GWAS).

Usage

HumanGWAS

Format

A data frame with 17,624 Single-Nucleotide Polymorphisms (SNPs) in the rows and 9 variables in the columns.

Details

• Chr

  • A factor containing the chromosome on which each SNP is located

• BP

  • Base Pair (location on the chromosome)

• Trait1_Beta

  • Slope from a GWAS analysis with Trait 1

• Trait1_P

  • P-value from a GWAS analysis with Trait 1

• Trait2_Beta

  • Slope from a GWAS analysis with Trait 2

• Trait2_P

  • P-value from a GWAS analysis with Trait 2

• Trait3_Beta

  • Slope from a GWAS analysis with Trait 3

• Trait3_P

  • P-value from a GWAS analysis with Trait 3

Author(s)

Liuyang Wang [e-mail]

Caitlin Collins [e-mail]

Source

Unpublished human GWAS analysis.

References

Robert Verity*, Caitlin Collins*, Daren C. Card, Sara M. Schaal, Liuyang Wang, & Katie E. Lotterhos. MINOTAUR: an R package for visualizing and calculating multivariate outliers in genomic datasets. In Review.

NESCent/MINOTAUR documentation built on May 7, 2019, 6:01 p.m.