calculate_overflow: Calculate Amount of Motif Length to Hard chromatin loop...
In NElnour/3dannotator: Classification of genome motifs or features to TADs
Description
Usage
Arguments
Value
View source: R/classification.R
Description
Calculates 'overflow' of a motif's length across chromatin loop boundaries. It returns
the proportion of motif's length that overlaps with the chromatin loop specified by
chromLoop_thresh.
Usage
1
calculate_overflow(motif_thresh, chromLoop_thresh, motif_len)
Arguments
motif_thresh
An integer denoting the motif's coordinate.
chromLoop_thresh
An integer denoting the chromatin loop boundary (hard)
motif_len
An integer denoting the length of the motif
Value
A double measuring the proportion of the motif's length to the chromatin loop
boundary.
NElnour/3dannotator documentation built on Dec. 12, 2019, 12:55 a.m.
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Description Usage Arguments Value
View source: R/classification.R
Description
Calculates 'overflow' of a motif's length across chromatin loop boundaries. It returns the proportion of motif's length that overlaps with the chromatin loop specified by chromLoop_thresh.
Usage
1 | calculate_overflow(motif_thresh, chromLoop_thresh, motif_len)
|
Arguments
motif_thresh |
An integer denoting the motif's coordinate. |
chromLoop_thresh |
An integer denoting the chromatin loop boundary (hard) |
motif_len |
An integer denoting the length of the motif |
Value
A double measuring the proportion of the motif's length to the chromatin loop boundary.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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