NHLBI-BCB/IKAP: IKAP: Identifying K mAjor cell Population group in single cell analysis

IKAP identifies candidate set(s) of major cell groups using the single cell analysis R package Seurat by evaluating sets of possible cell groups generated using different parameters in Seurat SNN clustering (i.e. resulotion r and the number of top principal components (nPC)). The results (tables and plots) are saved in the output directory. A Seurat object is returned with all sets of evaluated cell groups saved in the metadata data frame.

install.packages("remotes")
remotes::install_github("NHLBI-BCB/IKAP")