API for NKI-CCB/RUBIC
Recurrent DNA copy number break detection to identify driver aberrations
| Global functions | |
|---|---|
| RUBIC | Man page |
| RUBIC-class | Man page |
| adjust.boundaries | Source code |
| aggregate.segments | Source code |
| all.samp.param.estimation | Source code |
| amp.profile | Source code |
| analytical.to.perm.p | Source code |
| base.modules | Source code |
| broadest.adj | Source code |
| calc.single.scale.roughness | Source code |
| call.events | Source code |
| call.sig.abs.segments | Source code |
| cancel.recurrent.breaks | Source code |
| cna.matrix.to.segs | Source code |
| compute.gauss.kernel | Source code |
| estimate.parameters | Source code |
| extract.chromosome.levels | Source code |
| extract.parameter.at.kws | Source code |
| filter.overlaps | Source code |
| focal.events.to.tsv | Source code |
| gen.perm.profiles | Source code |
| gene.locs | Source code |
| genes | Man page |
| is.peak.valid | Source code |
| iter.extract.single.samp.params | Source code |
| iter.update.abs.cna | Source code |
| join.adj.segs | Source code |
| markers | Man page |
| max.mode | Source code |
| min.kw.peak.index | Source code |
| null.seg.matrix | Source code |
| num.broad.peaks | Source code |
| percentile.v2 | Source code |
| preprocess.genes.info | Source code |
| preprocess.map.loc | Source code |
| read.genes.info.biomart | Man page Source code |
| read.genes.info.tsv | Man page Source code |
| read.markers | Man page Source code |
| read.seg.file | Man page Source code |
| rubic | Man page Source code |
| samples | Man page |
| seg.cna | Man page |
| segments.at.fdr.abs | Source code |
| segs.to.cna.matrix | Source code |
| shuffle.cna | Source code |
| single.samp.param.estimation | Source code |
| single.samp.param.estimation.abs | Source code |
| sort.modules | Source code |
| update.abs.cna | Source code |
