flexgsea_calc_sig: Calculate significance of gene set enrichments from...
In NKI-CCB/flexgsea-r: Flexible Gene Set Enrichment Analysis
Description
Usage
References
See Also
Description
Calculates significance like Subramanian et al.. Significance is calculated
separately for positive and ES scores. A normalized enrichment score (NES)
is calculated. The NES for all gene sets are combined to get more precision
with less permutations.
Usage
1
References
Subramanian, A. et al. (2005) Gene Set Enrichment Analysis: A
Knowledge-Based Approach for Interpreting Genome-Wide Expression
Profiles. PNAS 102 (43): 15545-50.
doi:10.1073/pnas.0506580102.
See Also
Other functions for significance calculation: flexgsea_calc_sig_simple
NKI-CCB/flexgsea-r documentation built on April 30, 2021, 5:35 p.m.
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Description Usage References See Also
Description
Calculates significance like Subramanian et al.. Significance is calculated separately for positive and ES scores. A normalized enrichment score (NES) is calculated. The NES for all gene sets are combined to get more precision with less permutations.
Usage
1 |
References
Subramanian, A. et al. (2005) Gene Set Enrichment Analysis: A Knowledge-Based Approach for Interpreting Genome-Wide Expression Profiles. PNAS 102 (43): 15545-50. doi:10.1073/pnas.0506580102.
See Also
Other functions for significance calculation: flexgsea_calc_sig_simple
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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