flexgsea_limma: Score genes with limma with a design matrix.
In NKI-CCB/flexgsea-r: Flexible Gene Set Enrichment Analysis
Description
Scores genes by their coefficients in from limma.
The argument y should be a design matrix, as produced by
model.matrix.
For RNA-seq data, use the
EList object produced by the voom function.
Do not call directly, but give as the gene.score.fn argument to
flexgsea.
Usage
1
See Also
Other gene scoring functions: flexgsea_lm,
flexgsea_s2n
NKI-CCB/flexgsea-r documentation built on April 30, 2021, 5:35 p.m.
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Description
Scores genes by their coefficients in from limma.
The argument y should be a design matrix, as produced by
model.matrix.
For RNA-seq data, use the
EList object produced by the voom function.
Do not call directly, but give as the gene.score.fn argument to
flexgsea.
Usage
1 |
See Also
Other gene scoring functions: flexgsea_lm,
flexgsea_s2n
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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