API for Nanostring-Biostats/NanoStringNCTools
NanoString nCounter Tools

Global functions
.allFALSE	Source code
.allNA	Source code
.allTRUE	Source code
.allZero	Source code
.apply	Source code
.marginalSummary	Source code
.safe.as.integer	Source code
.sigCalc	Source code
.validNonNegativeInteger	Source code
.validNonNegativeNumber	Source code
.validPositiveNumber	Source code
.validRccSchema	Source code
NanoStringRccSet	Man page
NanoStringRccSet,ExpressionSet-method	Man page
NanoStringRccSet,NanoStringRccSet-method	Man page
NanoStringRccSet,environment-method	Man page
NanoStringRccSet,matrix-method	Man page
NanoStringRccSet,missing-method	Man page
NanoStringRccSet-autoplot	Man page
NanoStringRccSet-class	Man page
SignatureSet	Man page Source code Source code Source code Source code
SignatureSet-class	Man page
[,NanoStringRccSet-method	Man page
assayDataApply	Man page
assayDataApply,NanoStringRccSet-method	Man page
assayDataElement2	Source code
autoplot	Man page
autoplot.NanoStringRccSet	Man page Source code
class:NanoStringRccSet	Man page
class:SignatureSet	Man page
coerce,ExpressionSet,NanoStringRccSet-method	Man page
controlSubset	Man page
controlSubset,NanoStringRccSet-method	Man page
design,NanoStringRccSet-method	Man page
design<-,NanoStringRccSet,ANY-method	Man page
design<-,NanoStringRccSet,NULL-method	Man page
design<-,NanoStringRccSet,formula-method	Man page
dimLabels,NanoStringRccSet-method	Man page
dimLabels<-,NanoStringRccSet,character-method	Man page
endogenousSubset	Man page
endogenousSubset,NanoStringRccSet-method	Man page
esBy	Man page
esBy,NanoStringRccSet-method	Man page
fAbove	Man page Source code
fAtLeast	Man page Source code
fAtMost	Man page Source code
fBelow	Man page Source code
fCenter	Man page Source code
fIntCenter	Man page Source code
fIntScale	Man page Source code
fIntThresh	Man page Source code
fScale	Man page Source code
fThresh	Man page Source code
format_percent	Source code
geomMean	Source code
geom_beeswarm_interactive	Man page Source code
getSigFuncs	Man page
getSigFuncs,SignatureSet-method	Man page
getpslabels	Source code
ggplot.NanoStringRccSet	Man page Source code
groups	Man page
groups,SignatureSet-method	Man page
groups<-	Man page
groups<-,SignatureSet,ANY-method	Man page
groups<-,SignatureSet,NULL-method	Man page
groups<-,SignatureSet,factor-method	Man page
housekeepingSubset	Man page
housekeepingSubset,NanoStringRccSet-method	Man page
isSinglePercent	Source code
kurtosis	Source code
length,SignatureSet-method	Man page
lengths,SignatureSet-method	Man page
log2t	Man page Source code
logt	Man page Source code
munge	Man page
munge,NanoStringRccSet-method	Man page
names,SignatureSet-method	Man page
negativeControlSubset	Man page
negativeControlSubset,NanoStringRccSet-method	Man page
nonControlSubset	Man page
nonControlSubset,NanoStringRccSet-method	Man page
normalize	Man page
normalize,NanoStringRccSet-method	Man page
positiveControlSubset	Man page
positiveControlSubset,NanoStringRccSet-method	Man page
protoheatmap	Source code
pscheck	Source code
readNanoStringRccSet	Man page Source code
readRccFile	Man page Source code
readRlfFile	Man page Source code
rscheck	Source code
sAbove	Man page Source code
sAtLeast	Man page Source code
sAtMost	Man page Source code
sBelow	Man page Source code
sCenter	Man page Source code
sData	Man page
sData,NanoStringRccSet-method	Man page
sIntCenter	Man page Source code
sIntScale	Man page Source code
sIntThresh	Man page Source code
sScale	Man page Source code
sThresh	Man page Source code
setQCFlags	Man page
setQCFlags,NanoStringRccSet-method	Man page
setSignatureFuncs<-	Man page
setSignatureFuncs<-,NanoStringRccSet,character-method	Man page
setSignatureGroups<-	Man page
setSignatureGroups<-,NanoStringRccSet,character-method	Man page
setSignatureGroups<-,NanoStringRccSet,factor-method	Man page
show,NanoStringRccSet-method	Man page
show,SignatureSet-method	Man page
signatureFuncs	Man page
signatureFuncs,NanoStringRccSet-method	Man page
signatureGroups	Man page
signatureGroups,NanoStringRccSet-method	Man page
signatureScores	Man page
signatureScores,NanoStringRccSet-method	Man page
signatureScoresApply	Man page
signatureScoresApply,NanoStringRccSet-method	Man page
signatureSubset	Man page
signatureSubset,NanoStringRccSet-method	Man page
signatures	Man page
signatures,NanoStringRccSet-method	Man page
signatures<-	Man page
signatures<-,NanoStringRccSet,SignatureSet-method	Man page
skewness	Source code
strwrpr	Source code
subset,NanoStringRccSet-method	Man page
summary,NanoStringRccSet-method	Man page
svarLabels	Man page
svarLabels,NanoStringRccSet-method	Man page
transform,NanoStringRccSet-method	Man page
update_geom_params	Man page Source code
validSignatureSet	Source code
version	Man page
version,SignatureSet-method	Man page
version<-	Man page
version<-,SignatureSet,ANY-method	Man page
version<-,SignatureSet,NULL-method	Man page
version<-,SignatureSet,character-method	Man page
weights,SignatureSet-method	Man page
weights<-	Man page
weights<-,SignatureSet,ANY-method	Man page
weights<-,SignatureSet,CompressedNumericList-method	Man page
weights<-,SignatureSet,NULL-method	Man page
weights<-,SignatureSet,NumericList-method	Man page
weights<-,SignatureSet,list-method	Man page
with,NanoStringRccSet-method	Man page
writeNanoStringRccSet	Man page Source code