readRccFile: Read RCC File

In Nanostring-Biostats/NanoStringNCTools: NanoString nCounter Tools

Read RCC File

Description

Read a NanoString Reporter Code Count (RCC) file.

Usage

readRccFile(file)

Arguments

file	A character string containing the path to the RCC file.

Value

An list object with five elements:

"Header"	a data.frame object containing the header information.
"Sample_Attributes"	a data.frame object containing the attributes of the sample.
"Lane_Attributes"	a data.frame object containing the attributes of the lane.
"Code_Summary"	a data.frame object containing the reporter code counts.
"Messages"	A character vector containing messages, if any.

Author(s)

Patrick Aboyoun

See Also

readNanoStringRccSet

Examples

datadir <- system.file("extdata", "3D_Bio_Example_Data",
                       package = "NanoStringNCTools")
rccs <- dir(datadir, pattern = "SKMEL.*\\.RCC$", full.names = TRUE)
rccData <- lapply(rccs, readRccFile)

Nanostring-Biostats/NanoStringNCTools documentation built on April 19, 2024, 8:21 p.m.