Description Usage Arguments Value Examples
View source: R/reconcileAliquots.R
This function helps you determine if the same number of aliquots for a particular subject/visit/specimen are in the site data and the biorepository data.
1 2 3 | reconcileAliquots(repository.data, site.data, repo.subject.column,
repo.visit.column, repo.specimen.column, site.subject.column,
site.visit.column, site.specimen.column)
|
repository.data |
|
site.data |
|
repo.subject.column |
Column name of subject IDs in repository |
repo.visit.column |
Column name of visit in repository |
repo.specimen.column |
Column name of specimen in repository |
site.subject.column |
Column name of subject IDs in site |
site.visit.column |
Column name of visit in repository |
site.specimen.column |
Column name of specimen in site |
A data.frame
with column names subject
, visit
, specimen
,
repository_aliquots
, and site_aliquots
.
1 2 3 4 5 6 7 8 9 10 11 12 13 | repository <- data.frame(subject = c(LETTERS[1:5], LETTERS[1:5], LETTERS[1:3]),
visit = c(1:5, 1:5, 1:3),
specimen = c(rep("blood", 5), rep("DNA", 5), "blood", "blood", "DNA"),
stringsAsFactors = FALSE)
site <- data.frame(patno = c(LETTERS[2:6], LETTERS[2:6]), clinevent = c(2:6, 2:6),
sample = c("RNA", rep("blood", 4), "Serum", rep("DNA", 4)),
stringsAsFactors = FALSE)
reconcileAliquots(repository.data = repository, site.data = site, repo.subject.column = "subject",
repo.visit.column = "visit", repo.specimen.column = "specimen",
site.subject.column = "patno", site.visit.column = "clinevent",
site.specimen.column = "sample")
|
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