Description Usage Arguments Value Examples
View source: R/get.symbol.from.homologID.r
Most outputs of this package are in the format of homolog IDs. To be useful they need to be converted to gene symbols. This functon does that.
1 2 3 4 5 6 7 | get.symbol.from.homologID(
homoIDs,
species1,
species2,
ortholog_data,
symbol_species
)
|
homoIDs |
The list of homolog IDs to be converted to gene symbols |
species1 |
String with the name of the first species, i.e. "mouse" |
species2 |
String with the name of the second species, i.e. "human" |
ortholog_data |
Output of analyse.orthology() function |
symbol_species |
The name of the species for which gene symbols should be returned. I.e. "mouse" |
List. The gene symbols equivilenet to homolog IDs in homoIDs
1 2 3 4 | allHomologs = load.homologs()
ortholog_data = analyse.orthology("human","mouse",allHomologs)
homoIDs_bg = ortholog_data$species2_allGenes
symbols_bg = get.symbol.from.homologID(homoIDs_bg,"human","mouse",ortholog_data,"mouse")
|
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