API for NelleV/moanin
An R Package for Time Course RNASeq Data Analysis

Global functions
.which_timepoints	Source code
DE_timecourse	Man page
DE_timecourse,Moanin-method	Man page
DE_timepoints	Man page
DE_timepoints,Moanin-method	Man page
Moanin	Man page
Moanin-class	Man page
Moanin-methods	Man page
NULL-method	Man page
[,Moanin,ANY,ANY,ANY-method	Man page
[,Moanin,ANY,character,ANY-method	Man page
[,Moanin,ANY,logical,ANY-method	Man page
[,Moanin,ANY,numeric,ANY-method	Man page
average_replicates	Source code
basis_matrix	Man page
basis_matrix,Moanin-method	Man page
calculateStat	Source code
center_data	Source code
check_data_meta	Man page Source code
check_is_2d	Man page Source code
compute_beta_null	Source code
compute_pvalue	Source code
consensus_matrix	Man page Source code
create_go_term_mapping	Man page Source code
create_meta_prediction	Man page
create_moanin_model	Man page
create_moanin_model,DataFrame-method	Man page
create_moanin_model,SummarizedExperiment-method	Man page
create_moanin_model,data.frame-method	Man page
create_moanin_model,matrix-method	Man page
create_timepoints_contrasts	Man page
create_timepoints_contrasts,Moanin-method	Man page
degrees_of_freedom	Man page
degrees_of_freedom,Moanin-method	Man page
discont_basis	Man page Source code
estimate_log_fold_change	Man page
estimate_log_fold_change,Moanin-method	Man page
exampleData	Man page
expand_contrast	Man page Source code
expression_filtering	Man page Source code
find_enriched_go_terms	Man page Source code
fit_predict_splines	Man page Source code
fit_splines	Man page Source code
get_auc_similarity_scores	Man page Source code
get_log_data	Man page
get_log_data,Moanin-method	Man page
get_nmi_scores	Source code
group_variable	Man page
group_variable,Moanin-method	Man page
group_variable<-	Man page
group_variable<-,Moanin-method	Man page
group_variable_name	Man page
group_variable_name,Moanin-method	Man page
group_variable_name<-	Man page
group_variable_name<-,Moanin-method	Man page
internal	Man page
is_contrasts	Man page Source code
lfc_per_time	Source code
log_transform	Man page
log_transform,Moanin-method	Man page
perWeek_barplot	Man page Source code
pertimepoint_contrast	Source code
plot_cdf_consensus	Man page Source code
plot_centroid_individual	Source code
plot_model_explorer	Man page Source code
plot_splines_data	Man page
plot_splines_data,Moanin,DataFrame-method	Man page
plot_splines_data,Moanin,data.frame-method	Man page
plot_splines_data,Moanin,matrix-method	Man page
plot_splines_data,Moanin,missing-method	Man page
plot_splines_data,Moanin,numeric-method	Man page
pvalues_fisher_method	Man page
reconstruct_meta_from_lfc	Source code
rescale_values	Man page
rescale_values,	Man page
rescale_values,Moanin-method	Man page
rescale_values,NULL-method	Man page
rescale_values,missing-method	Man page
show	Man page
show,Moanin-method	Man page
spline_formula	Man page
spline_formula,Moanin-method	Man page
splines_kmeans	Man page
splines_kmeans,Moanin-method	Man page
splines_kmeans_predict	Man page
splines_kmeans_predict,Moanin-method	Man page
splines_kmeans_score_and_label	Man page
splines_kmeans_score_and_label,Moanin-method	Man page
testData	Man page
testGenesGO	Man page
testMeta	Man page
time_by_group_variable	Man page
time_by_group_variable,Moanin-method	Man page
time_variable	Man page
time_variable,Moanin-method	Man page
time_variable<-	Man page
time_variable<-,Moanin-method	Man page
time_variable_name	Man page
time_variable_name,Moanin-method	Man page
time_variable_name<-	Man page
time_variable_name<-,Moanin-method	Man page
timepointdiff_contrasts	Source code