pvalues_fisher_method: Fisher's method to combine pvalues
In NelleV/moanin: An R Package for Time Course RNASeq Data Analysis

Description Usage Arguments Value Examples

Combines all p-values per rows.

1	pvalues_fisher_method(pvalues)

pvalues

a matrix of pvalues, with columns corresponding to different tests or sources of p-values, and rows corresponding to the genes from which the p-values come.

a vector of p-values, one for each row of pvalues, that is the result of Fisher's combined probability test applied to the p-values in that row.

data(exampleData)
moanin <- create_moanin_model(data=testData,meta=testMeta)
contrasts <- create_timepoints_contrasts(moanin,"C", "K")
deTimepoints=DE_timepoints(moanin, 
  contrasts=contrasts, use_voom_weights=FALSE)
fisherPval=pvalues_fisher_method(
  deTimepoints[,grep("pval",colnames(deTimepoints))])
head(fisherPval)