Files in NelleV/moanin
An R Package for Time Course RNASeq Data Analysis
.Rbuildignore
.github/workflows/build-html-and-deploy.yml
.github/workflows/test.yml
.gitignore
.scripts/biocheck_package.R
.scripts/build_documentation.R
.scripts/build_documentation_html.R
.scripts/build_package.R
.scripts/check_package.R
.scripts/install_all_dependencies.R
.scripts/install_extra_dependencies.R
.scripts/install_package.R
.scripts/test_package.R
.scripts/test_package_cov.R
DESCRIPTION
LICENSE
Makefile
NAMESPACE
R.travis.yml
R/AllClasses.R
R/AllHelper.R
R/DE_timecourse.R
R/DE_timepoints.R
R/GO_terms_analysis.R
R/cluster.R
R/cluster_validation.R
R/discont_basis.R
R/estimate_lfc.R
R/exampleData.R
R/normalization.R
R/splines.R
R/validation.R
R/visualization.R
README
data/exampleData.rda
docker.travis.yml
index.md
man/DE_timecourse.Rd
man/DE_timepoints.Rd
man/Moanin-class.Rd
man/Moanin-methods.Rd
man/consensus_matrix.Rd
man/create_meta_prediction.Rd
man/discont_basis.Rd
man/estimate_log_fold_change.Rd
man/exampleData.Rd
man/expression_filtering.Rd
man/find_enriched_go_terms.Rd
man/fit_predict_splines.Rd
man/fit_splines.Rd
man/get_auc_similarity_scores.Rd
man/internal.Rd
man/perWeek_barplot.Rd
man/plot_splines_data.Rd
man/pvalues_fisher_method.Rd
man/rescale_values.Rd
man/splines_kmeans.Rd
man/splines_kmeans_score_and_label.Rd
pkgdown/_pkgdown.yml
tests/testthat.R
tests/testthat/test-DE_timecourse.R
tests/testthat/test-DE_timepoints.R
tests/testthat/test-cluster.R
tests/testthat/test-cluster_validation.R
tests/testthat/test-estimate_lfc.R
tests/testthat/test-splines.R
tests/testthat/test-splines_model.R
tests/testthat/test-validation.R
tests/testthat/test-visualization.R
vignettes/documentation.Rmd
vignettes/testDocumentation.Rmd
