Man pages for NelleV/moanin
An R Package for Time Course RNASeq Data Analysis
| consensus_matrix | Compute consensus matrix from labels |
| create_meta_prediction | Create prediction meta data from splines model |
| DE_timecourse | Run spline models and test for DE of contrasts. |
| DE_timepoints | Fit weekly differential expression analysis |
| discont_basis | Provides set of basis functions on either side of a time... |
| estimate_log_fold_change | Estimates log fold change |
| exampleData | Small data set for running examples |
| expression_filtering | Utility function to filter out low-expressed genes |
| find_enriched_go_terms | Find enriched GO terms |
| fit_predict_splines | Get fitted values for splines for each gene |
| fit_splines | Fit splines to each gene of data matrix, used by... |
| get_auc_similarity_scores | Evaluate the consensus between sets of clusterings |
| internal | Internal Validation Checks |
| Moanin-class | Class Moanin |
| Moanin-methods | Helper methods for the Moanin class |
| perWeek_barplot | Creates barplot of results of per-timepoint comparison |
| plot_splines_data | Plotting splines |
| pvalues_fisher_method | Fisher's method to combine pvalues |
| rescale_values | Rescales rows of data to be between 0 and 1 |
| splines_kmeans | Performs splines clustering using K-means |
| splines_kmeans_score_and_label | Assign score and labels from raw data |
