continental_land_bridge_cs: Parameter space of the continental land-bridge clade-specific...

In Neves-P/DAISIErobustness: Test the Robustness of DAISIE to Geodynamics and Traits

Parameter space of the continental land-bridge clade-specific diversity-dependent analysis

Description

A dataset containing the DAISIE parameters for 128 parameter sets.

Format

A data frame with 128 rows and 16 variables:

time

Numeric defining the length of the simulation in time units

M

Numeric defining the size of mainland pool, i.e. the number of species that can potentially colonize the island

lac_1

lambda^c (cladogenesis rate)

mu_1

mu (extinction rate)

K_1

K (carrying capacity), set K=Inf for diversity independence

gam_1

gamma (immigration rate)

laa_1

lambda^a (anagenesis rate)

x_s

the probability of sampling a species from the mainland

x_nonend

the probability of the species sampled from the mainland being nonendemic

shift_times

Numeric vector specifying when the rate shifts occur before the present

divdepmodel

Option divdepmodel = 'CS' runs a model with clade-specific carrying capacity, where diversity-dependence operates only within single clades, i.e. only among species originating from the same mainland colonist. Option divdepmodel = 'IW' runs a model with island-wide carrying capacity, where diversity-dependence operates within and among clades.

lac_2

lambda^c (cladogenesis rate) for rate set 2 in rate shift model

mu_2

mu (extinction rate) for rate set 2 in rate shift model

K_2

K (K (carrying capacity) for rate set 2 in rate shift model, set K=Inf for diversity independence

gam_2

gamma (immigration rate) for rate set 2 in rate shift model

laa_2

ambda^a (anagenesis rate) for rate set 2 in rate shift model

Neves-P/DAISIErobustness documentation built on May 22, 2024, 4:26 p.m.