.gitattributes
.gitignore
.nojekyll
.travis.yml
0100-intro.Rmd
0200-background.Rmd
0300-method.Rmd
0400-results.Rmd
0500-recomendations.Rmd
0600-appendix.Rmd
0800-appendix-050152.Rmd
0800-appendix-050155.Rmd
0800-appendix-050159.Rmd
0800-appendix-050181.Rmd
0800-appendix-050185.Rmd
0800-appendix-050261.Rmd
0800-appendix-062423.Rmd
0800-appendix-062425.Rmd
0800-appendix-062516.Rmd
0800-appendix-197533.Rmd
0800-appendix-197534.Rmd
0800-appendix-197542.Rmd
0800-appendix-197555.Rmd
2000-references.Rmd
20201216_giterror.txt
DESCRIPTION
Dockerfile
LICENSE
R/010-setup.R
R/analyze_fish_wct.R
R/archived/extract-bcfishpass-phase2.R
R/archived/extract-bcfishpass-planning2-report.R
R/download-field-maps.R
R/extract-bcfishpass-planning.R
R/extract-bcfishpass-planning2-barriers-anthropogenic.R
R/extract-fish-sites-from-gpx.R
R/extract-fish.R
R/extract-fiss-species-table.R
R/extract-fwa-watershed-ltree.R
R/extract-hydrometric.R
R/extract-pg.R
R/extract-planning-matching-results.R
R/extract-rd-tenure.R
R/functions-fish.R
R/functions-phase2.R
R/functions.R
R/load-bcdata.R
R/load-crossings-xref.R
R/load-html-summary-tables.R
R/load-obstacles-xref.R
R/load-structure-size-type.R
R/make-report.R
R/outgoing-mapping.R
R/packages.R
R/photos-amalgamate-culvert.R
R/photos-backup-resize.R
R/photos-extract-metadata.R
R/photos-extract-phase1.R
R/photos-extract-phase1b.R
R/photos-extract-phase2.R
R/photos-extract-reassessments.R
R/run.R
R/set-pdf-metadata.R
R/tables-phase1-cost-estimate.R
R/tables-phase2-cost-estimate.R
R/tables-phase2.R
R/tables-reporting.R
R/tables.R
README.md
_bookdown.yml
_build.sh
_deploy.sh
_output.yml
book.bib
data/Attachment_1_elk_planning.kml
data/Attachment_1_elk_planning_kml.zip
data/backup/bcfishpass-phase2.csv
data/backup/bcfishpass.csv
data/backup/fishpass_mapping.gpkg
data/backup/habitat_confirmations_20201202_before_summary_paste.xls
data/bcfishpass-phase2.csv
data/bcfishpass_outputs.zip
data/fishpass_mapping.gpkg
data/habitat_confirmation_tracks.gpx
data/habitat_confirmations.xls
data/habitat_confirmations_ef_time.xlsx
data/habitat_confirmations_priorities.xlsx
data/photo_metadata.csv
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data/planning_kmls/drafts/elk_field_sites_20200915.kml
data/planning_kmls/drafts/elk_planning_kmls.zip
data/planning_kmls/drafts/flathead_planning.kml
data/planning_kmls/qgis_queries.txt
data/planning_kmls/read_me.txt
data/planning_results.csv
data/pscis_phase1.xlsm
data/pscis_phase1b.xlsm
data/pscis_phase2.xlsm
data/pscis_reassessments.xlsm
data/raw_input/elk_field_2020_al.gpx
data/raw_input/elk_field_2020_kyle.GPX
data/raw_input/fiss_species_table.csv
data/raw_input/hab_wshds_ltree.kml
data/raw_input/habitat_confirmation_fish_summary.csv
data/raw_input/habitat_confirmation_fish_summary2.csv
data/raw_input/habitat_confirmation_site_utms.csv
data/raw_input/modelled_stream_crossings_fixes_al.csv
data/raw_input/pscis1b_str_type.csv
data/raw_input/pscis2_rd_tenure.csv
data/raw_input/pscis2_str_type.csv
data/raw_input/pscis2b_str_type.csv
data/raw_input/pscis_bcdata.csv
data/raw_input/pscis_modelledcrossings_streams_xref.csv
data/raw_input/pscis_phase2_study_area.csv
data/raw_input/pscis_study_area.csv
data/raw_input/tab_cost_rd_mult.csv
data/raw_input/wct_elkr_grad.csv
data/raw_input/wsheds.kml
data/raw_input/wsheds_up1.kml
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debug.log
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docs/Elk.pdf
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docs/appendix---197534---weigert-creek.html
docs/appendix---197542---hartley-creek.html
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docs/appendix---50155---tributary-to-lizard-creek.html
docs/appendix---50159---tributary-to-lizard-creek.html
docs/appendix---50181---tributary-to-morrissey-creek.html
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docs/appendix---50261---tributary-to-michel-creek.html
docs/appendix---62423---harriet-lake-creek.html
docs/appendix---62425-62426---grave-creek.html
docs/appendix---62516---tributary-to-lizard-creek.html
docs/appendix---phase-1-fish-passage-assessment-data-and-photos.html
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