API for NikNakk/snpStats
SnpMatrix and XSnpMatrix classes and methods

Global functions
Asnps	Man page
Autosomes	Man page
Fst	Man page
GlmEstimates-class	Man page
GlmTests-class	Man page
GlmTestsScore-class	Man page
ImputationRules-class	Man page
SingleSnpTests-class	Man page
SingleSnpTestsScore-class	Man page
SnpMatrix-class	Man page
XSnpMatrix-class	Man page
Xchromosome	Man page
Xsnps	Man page
[,GlmEstimates,ANY,missing,missing-method	Man page
[,GlmTests,ANY,missing,missing-method	Man page
[,GlmTestsScore,ANY,missing,missing-method	Man page
[,ImputationRules,ANY,missing,missing-method	Man page
[,SingleSnpTests,ANY,missing,missing-method	Man page
[,SingleSnpTestsScore,ANY,missing,missing-method	Man page
[,SnpMatrix,ANY,ANY,ANY-method	Man page
[,XSnpMatrix,ANY,ANY,ANY-method	Man page
[<-,XSnpMatrix,ANY,ANY,XSnpMatrix-method	Man page
can.impute	Man page
cbind,SnpMatrix-method	Man page
cbind2,SnpMatrix,SnpMatrix-method	Man page
ceph.1mb	Man page
chi.squared	Man page
chi.squared,GlmTests,missing-method	Man page
chi.squared,SingleSnpTests,numeric-method	Man page
coerce,GlmEstimates,GlmTests-method	Man page
coerce,GlmTests,data.frame-method	Man page
coerce,SingleSnpTests,data.frame-method	Man page
coerce,SnpMatrix,XSnpMatrix-method	Man page
coerce,SnpMatrix,character-method	Man page
coerce,SnpMatrix,numeric-method	Man page
coerce,XSnpMatrix,character-method	Man page
coerce,matrix,SnpMatrix-method	Man page
col.summary	Man page
convert.snpMatrix	Man page
convert.snpMatrix.dir	Man page
deg.freedom	Man page
deg.freedom,GlmTests-method	Man page
effect.sign	Man page
effect.sign,GlmTests,logical-method	Man page
effect.sign,SingleSnpTestsScore,missing-method	Man page
effective.sample.size	Man page
effective.sample.size,SingleSnpTests-method	Man page
example-new	Man page
families	Man page
filter.rules	Man page
for.exercise	Man page
g2post	Man page
genotypes	Man page
glm.test.control	Man page
ibsCount	Man page
ibsDist	Man page
imputation.maf	Man page
imputation.nsnp	Man page
imputation.r2	Man page
impute.snps	Man page
initialize,SnpMatrix-method	Man page
initialize,XSnpMatrix-method	Man page
is.na,SnpMatrix-method	Man page
ld	Man page
ld.example	Man page
mach1.out.mlprob.gz	Man page
mean2g	Man page
misinherits	Man page
mvtests	Man page
names,GlmTests-method	Man page
names,SingleSnpTests-method	Man page
p.value	Man page
p.value,GlmTests,missing-method	Man page
p.value,SingleSnpTests,numeric-method	Man page
pedData	Man page
plot,ImputationRules,missing-method	Man page
plotUncertainty	Man page
pool	Man page
pool2	Man page
pool2,GlmTestsScore,GlmTestsScore,logical-method	Man page
pool2,SingleSnpTestsScore,SingleSnpTestsScore,logical-method	Man page
post2g	Man page
pp	Man page
qq.chisq	Man page
rbind,SnpMatrix-method	Man page
rbind2,SnpMatrix,SnpMatrix-method	Man page
read.beagle	Man page
read.impute	Man page
read.long	Man page
read.mach	Man page
read.pedfile	Man page
read.plink	Man page
read.snps.long	Man page
row.summary	Man page
sample-long-alleles.gz	Man page
sample-long.gz	Man page
sample.bed	Man page
sample.bim	Man page
sample.fam	Man page
sample.info	Man page
sample.size	Man page
sample.size,GlmTests-method	Man page
sample.size,SingleSnpTests-method	Man page
show,GlmEstimates-method	Man page
show,GlmTests-method	Man page
show,ImputationRules-method	Man page
show,SingleSnpTests-method	Man page
show,SnpMatrix-method	Man page
show,XSnpMatrix-method	Man page
single.snp.tests	Man page
sm.compare	Man page
snp.cor	Man page
snp.imputation	Man page
snp.lhs.estimates	Man page
snp.lhs.tests	Man page
snp.post.multiply	Man page
snp.pre.multiply	Man page
snp.rhs.estimates	Man page
snp.rhs.tests	Man page
snp.support	Man page
snpStats	Man page
snpStats-package	Man page
snps.10	Man page
subject.data	Man page
subject.support	Man page
summary,GlmTests-method	Man page
summary,ImputationRules-method	Man page
summary,SingleSnpTests-method	Man page
summary,SnpMatrix-method	Man page
summary,XSnpMatrix-method	Man page
support.ld	Man page
switch.alleles	Man page
switch.alleles,GlmTestsScore,character-method	Man page
switch.alleles,SingleSnpTestsScore,ANY-method	Man page
switch.alleles,SnpMatrix,ANY-method	Man page
tdt.snp	Man page
test.allele.switch	Man page
testdata	Man page
write.SnpMatrix	Man page
write.plink	Man page
xxt	Man page
yri.1mb	Man page