Files in NikNakk/snpStats
SnpMatrix and XSnpMatrix classes and methods
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/compare.R
R/contingency.table.R
R/convert.R
R/glm-test.R
R/imputation.R
R/indata.R
R/ld.R
R/long.R
R/misc.R
R/mvtests.R
R/outdata.R
R/pedfile.R
R/plink.R
R/qc.R
R/qq-chisq.R
R/single.R
R/ss.R
R/structure.R
R/tdt-single.R
R/xstuff.R
build/vignette.rds
data/datalist
data/families.RData
data/for.exercise.RData
data/ld.example.RData
data/testdata.RData
inst/doc/Fst-vignette.R
inst/doc/Fst-vignette.Rnw
inst/doc/Fst-vignette.pdf
inst/doc/data-input-vignette.R
inst/doc/data-input-vignette.Rnw
inst/doc/data-input-vignette.pdf
inst/doc/differences.Rnw
inst/doc/differences.pdf
inst/doc/imputation-vignette.R
inst/doc/imputation-vignette.Rnw
inst/doc/imputation-vignette.pdf
inst/doc/ld-vignette.R
inst/doc/ld-vignette.Rnw
inst/doc/ld-vignette.pdf
inst/doc/pca-vignette.R
inst/doc/pca-vignette.Rnw
inst/doc/pca-vignette.pdf
inst/doc/snpStats-vignette.R
inst/doc/snpStats-vignette.Rnw
inst/doc/snpStats-vignette.pdf
inst/doc/tdt-vignette.R
inst/doc/tdt-vignette.Rnw
inst/doc/tdt-vignette.pdf
inst/extdata/mach1.out.mlprob.gz
inst/extdata/sample-long-alleles.gz
inst/extdata/sample-long.gz
inst/extdata/sample.bed
inst/extdata/sample.bim
inst/extdata/sample.fam
inst/extdata/sample.info
inst/extdata/sample.ped.gz
man/Fst.Rd
man/GlmEstimates-class.Rd
man/GlmTests-class.Rd
man/ImputationRules-class.Rd
man/SingleSnpTests-class.Rd
man/SnpMatrix-class.Rd
man/XSnpMatrix-class.Rd
man/chi.squared.Rd
man/convert.snpMatrix.Rd
man/example-new.Rd
man/families.Rd
man/filter.rules.Rd
man/for.exercise.Rd
man/glm.test.control.Rd
man/ibsCount.Rd
man/ibsDist.Rd
man/imputation.maf.Rd
man/impute.snps.Rd
man/ld.Rd
man/ld.example.Rd
man/mean2g.Rd
man/misinherits.Rd
man/mvtests.Rd
man/plotUncertainty.Rd
man/pool.Rd
man/pool2.Rd
man/pp.Rd
man/qq.chisq.Rd
man/read.beagle.Rd
man/read.impute.Rd
man/read.long.Rd
man/read.mach.Rd
man/read.pedfile.Rd
man/read.plink.Rd
man/read.snps.long.Rd
man/row.summary.Rd
man/sample.Rd
man/single.snp.tests.Rd
man/sm.compare.Rd
man/snp.cor.Rd
man/snp.imputation.Rd
man/snp.lhs.estimates.Rd
man/snp.lhs.tests.Rd
man/snp.pre.multiply.Rd
man/snp.rhs.estimates.Rd
man/snp.rhs.tests.Rd
man/snpStats-package.Rd
man/switch.alleles.Rd
man/tdt.snp.Rd
man/test.allele.switch.Rd
man/testdata.Rd
man/write.plink.Rd
man/write.snp.matrix.Rd
man/xxt.Rd
snpStats.Rproj
src/Makevars
src/Makevars.win
src/Rmissing.h
src/Runcertain.c
src/bind.c
src/count_gt.c
src/covwin.c
src/covwin.h
src/crc32.h
src/deflate.h
src/force_hom.c
src/fst.c
src/glm_test.c
src/glm_test.h
src/glm_test_R.c
src/gsl_poly.h
src/hash_index.c
src/hash_index.h
src/hphase.c
src/hphase.h
src/imputation.c
src/imputation.h
src/in.c
src/inffast.h
src/inffixed.h
src/inflate.h
src/inftrees.h
src/input.c
src/invert.c
src/invert.h
src/ipf.c
src/ipf.h
src/ld.c
src/misc.c
src/mla.c
src/mla.h
src/mvphenotype.c
src/outdata.c
src/plink.c
src/read_uncertain.c
src/readped.c
src/single_snp_tests.c
src/snp_summary.c
src/snpmpy.c
src/solve_cubic.c
src/structure.c
src/switch.c
src/tdt.c
src/uncertain.c
src/uncertain.h
vignettes/Fst-vignette.Rnw
vignettes/data-input-vignette.Rnw
vignettes/differences.Rnw
vignettes/imputation-vignette.Rnw
vignettes/ld-vignette.Rnw
vignettes/pca-vignette.Rnw
vignettes/snpStats-vignette.Rnw
vignettes/tdt-vignette.Rnw
