This dataset comprises several data frames from a fictional (and unrealistically small) study. The dataset started off as real data from a screen of non-synonymous SNPs for association with type 1 diabetes, but the original identifiers have been removed and a random case/control status has been generated.
There are five data objects in the dataset:
Autosomes: An object of class
containing genotype calls for 400 subjects at 9445 autosomal SNPs
Xchromosome: An object of class
containing genotype calls for 400 subjects at 155 SNPs on the X
Asnps: A dataframe containing information about the
autosomal SNPs. Here it contains only one variable,
chromosome, indicating the chromosomes on which the SNPs are
Xsnps: A dataframe containing information about the X
chromosome SNPs. Here it is empty and is only included for
subject.data: A dataframe containing information about
the subjects from whom each row of SNP data was obtained. Here it
cc: Case-control status
region: Geographical region of residence
The data were obtained from the diabetes and inflammation laboratory (see http://www-gene.cimr.cam.ac.uk)
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