In NiklasTR/dcp_helper: Create metadata and job files for distributed cell profiler

library(pool)
library(RPostgres)
library(DBI)
library(tidyverse)
library(dbplyr)

pool <- pool::dbPool(RPostgres::Postgres(), 
                     host = "biosensor.c9k2hfiwt5mi.us-east-2.rds.amazonaws.com",
                     dbname = "biosensor",
                     port = 5432,
                     user = "biosensor",
                     password = readLines("~/password.txt"))

dbListTables(pool)

cells <- tbl(pool, "cells")

cells %>% count(image_number) %>% arrange(image_number)

NiklasTR/dcp_helper documentation built on June 12, 2020, 10:22 p.m.