createDiagnosticsExplorerZip: Create publishable shiny zip

In OHDSI/CohortDiagnostics: Diagnostics for OHDSI Cohorts

Create publishable shiny zip

Description

A utility designed for creating a published zip of a shiny app with an sqlite database. Designed for sharing projects on servers like data.ohdsi.org.

Takes the shiny code from the R project and adds an sqlite file to a zip archive. Uncompressed cohort diagnostics sqlite databases can become large very quickly.

Usage

createDiagnosticsExplorerZip(
  outputZipfile = file.path(getwd(), "DiagnosticsExplorer.zip"),
  sqliteDbPath = "MergedCohortDiagnosticsData.sqlite",
  shinyDirectory = system.file(file.path("shiny", "DiagnosticsExplorer"), package =
    "CohortDiagnostics"),
  overwrite = FALSE
)

Arguments

outputZipfile	The output path for the zip file
sqliteDbPath	Merged Cohort Diagnostics sqlitedb created with createMergedResultsFile
shinyDirectory	(optional) Path to the location where the shiny code is stored. By default, this is the package root
overwrite	If the zip file already exists, overwrite it?

OHDSI/CohortDiagnostics documentation built on Oct. 9, 2024, 5:46 a.m.