execute: Execute OHDSI Study 2

In OHDSI/OhdsiStudy2: OHDSI Treatment Pathways Study Protocol 12 months

Description

Execute OHDSI Study 2

Usage

execute(dbms, user, password, server, port = NULL, cdmSchema, resultsSchema,
  minCellCount = 1, sourceName = "source_name", folder = getwd())

Arguments

dbms	The type of DBMS running on the server. Valid values are "mysql" for MySQL "oracle" for Oracle "postgresql" for PostgreSQL "redshift" for Amazon Redshift "sql server" for Microsoft SQL Server
user	The user name used to access the server.
password	The password for that user
server	The name of the server
port	(optional) The port on the server to connect to
cdmSchema	Schema name where your patient-level data in OMOP CDM format resides
resultsSchema	Schema where you'd like the results tables to be created (requires user to have create/write access)
minCellCount	The smallest allowable cell count, 1 means all counts are allowed
sourceName	Short name that will be appeneded to results table name
folder	The name of the local folder to place results; make sure to use forward slashes (/)

Details

This function executes OHDSI Study 2 – Treatment Pathways Study Protocol 12 months. This is a study of treatment pathways in hypertension, diabetes and depression during the first 12 months after diagnosis. Detailed information and protocol are available on the OHDSI Wiki.

Value

Study results are placed in CSV format files in specified local folder.

OHDSI/OhdsiStudy2 documentation built on May 7, 2019, 8:27 p.m.