prepareForPlpData: Prepares for the running the PatientLevelPrediction package

In OHDSI/RiskStratifiedEstimation: Risk Stratified Effect Estimation

Prepares for the running the PatientLevelPrediction package

Description

Prepares for running the PatientLevelPrediction package by merging the treatment and comparator cohorts and defining a new covariate for treatment.

Usage

prepareForPlpData(
  treatmentCohortId,
  comparatorCohortId,
  targetCohortId,
  cohortDatabaseSchema,
  cohortTable,
  resultsDatabaseSchema,
  mergedCohortTable,
  connectionDetails
)

Arguments

treatmentCohortId	The treatment cohort id
comparatorCohortId	The comparator cohort id
targetCohortId	The id of the merged cohorts
cohortDatabaseSchema	The name of the database schema that is the location where the cohort data used to define the at risk cohort is available
cohortTable	The table that contains the treatment and comparator cohorts.
resultsDatabaseSchema	The name of the database schema to store the new tables. Need to have write access.
mergedCohortTable	The table that will contain the computeIncidenceAnalysis
connectionDetails	The connection details required to connect to adatabase.

Value

Creates the tables resultsDatabaseSchema.mergedCohortTable, resultsDatabaseSchema.attributeDefinitionTable and resultsDatabaseSchema.cohortAttributeTable

OHDSI/RiskStratifiedEstimation documentation built on March 13, 2023, 8:16 a.m.