| BEAST_R0_Full | BEAST_R0_Full |
| BEAST_R0_Network_Pull_Tracer | BEAST_R0_Network_Pull_Tracer |
| Bias_Plot | Bias plotting |
| hello | Hello, World! |
| HKY85 | HKY85 Substiution Model |
| Infection_sim | Forwards Infection Simulator |
| JC69 | JC69 Substiution Model |
| K80 | K80 Substiution Model |
| List_To_Xml | List to XML |
| New_sampling | Forwards genetic sequence simulator |
| Nex_2_BEASTxml | Take nex and turn into BEAST 2.3 xml file |
| Sequencing | Forwards genetic sequence simulator |
| Tracer_Addon | Tracer Addon Function |
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