Infection_sim: Forwards Infection Simulator

In OJWatson/evoflution: Forward in time epidemic and genetic simulator with a focus on flu

Description

Infection_sim produces a list of generations detailing an infection process

Usage

Infection_sim(N = 1e+05, R0 = 2, Tg = 2.6, fixed.offspring = FALSE,
  scale = 1, size = 1, real.time = FALSE, continous.time = TRUE)

Arguments

N	Target infected population size. Default = 1e5
R0	basic reproduction number. Default = 2
Tg	mean generation time. Default = 2.6 days
fixed.offspring	Boolean dictating whether R0 offspring are always produced. Default = FALSE
scale	rgamma scale parameter. Default = 1
size	rnbinom size parameter Default = 1
real.time	Boolean dictating. whether an extra generation is simulated producing extra for real.time consideration.Default = FALSE
continous.time	Boolean dictating whether gamma process is used for generation time distribution. Default = TRUE

Value

Returns a list of 5 lists

OJWatson/evoflution documentation built on May 7, 2019, 8:32 p.m.