ct.extractSE: Extract gCrisprTools objects from a 'SummarizedExperiment'
In OscarBrock/gCrisprTools: Suite of Functions for Pooled Crispr Screen QC and Analysis
View source: R/fileutilities.R
ct.extractSE R Documentation
Extract gCrisprTools objects from a 'SummarizedExperiment'
Description
Utility function to enable gCrisprTools functions to take 'SummarizedExperiment' class objects (or subclasses thereof) as input.
Throws errors when unexpected things happen.
Usage
ct.extractSE(what, se)
Arguments
what
What gCrisprTools-friendly object to compile. options are:
- 'es': an 'ExpressionSet', compiled from the 'exprs' slot of the 'assayData', with 'colData' and 'rowData' saved as the 'fData' and 'pData'
- 'ann': a gCrisprTools annotation from the 'rowData'
se
The 'SummarizedExperiment' object.
Value
The specified gCrisprTools-friendly object
Author(s)
Russell Bainer
OscarBrock/gCrisprTools documentation built on June 9, 2025, 11:42 a.m.
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View source: R/fileutilities.R
| ct.extractSE | R Documentation |
Extract gCrisprTools objects from a 'SummarizedExperiment'
Description
Utility function to enable gCrisprTools functions to take 'SummarizedExperiment' class objects (or subclasses thereof) as input. Throws errors when unexpected things happen.
Usage
ct.extractSE(what, se)
Arguments
what |
What gCrisprTools-friendly object to compile. options are: - 'es': an 'ExpressionSet', compiled from the 'exprs' slot of the 'assayData', with 'colData' and 'rowData' saved as the 'fData' and 'pData' - 'ann': a gCrisprTools annotation from the 'rowData' |
se |
The 'SummarizedExperiment' object. |
Value
The specified gCrisprTools-friendly object
Author(s)
Russell Bainer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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