calculateResultType: Calculate Result Type

In OskarHansson/strvalidator: Process Control and Validation of Forensic STR Kits

Calculate Result Type

Description

Calculate the result type for samples.

Usage

calculateResultType(
  data,
  kit = NULL,
  add.missing.marker = TRUE,
  threshold = NULL,
  mixture.limits = NULL,
  partial.limits = NULL,
  subset.name = NA,
  marker.subset = NULL,
  debug = FALSE
)

Arguments

data	a data frame containing at least the column 'Sample.Name'.
kit	character string or integer defining the kit.
add.missing.marker	logical, default is TRUE which adds missing markers.
threshold	integer indicating the dropout threshold.
mixture.limits	integer or vector indicating subtypes of 'Mixture'.
partial.limits	integer or vector indicating subtypes of 'Partial'.
subset.name	string naming the subset of 'Complete'.
marker.subset	string with marker names defining the subset of 'Complete'.
debug	logical indicating printing debug information.

Details

Calculates result types for samples in 'data'. Defined types are: 'No result', 'Mixture', 'Partial', and 'Complete'. Subtypes can be defined by parameters. An integer passed to 'threshold' defines a subtype of 'Complete' "Complete profile all peaks >threshold". An integer or vector passed to 'mixture.limits' define subtypes of 'Mixture' "> [mixture.limits] markers". An integer or vector passed to 'partial.limits' define subtypes of 'Partial' "> [partial.limits] peaks". A string with marker names separated by pipe (|) passed to 'marker.subset' and a string 'subset.name' defines a subtype of 'Partial' "Complete [subset.name]".

Value

data.frame with columns 'Sample.Name','Type', and 'Subtype'.

OskarHansson/strvalidator documentation built on July 22, 2023, 12:04 p.m.