Tools for Working with PAWMAP Data

dropAmphibs | Drop Amphibians from a data frame of fish names |

fitStats | Create text summarizing regression fit |

fixFishNames | Standardize fish names and correct common misspellings |

formSubstrate | Load and format PAWMAP substrate data |

gmean | Calculate the geometric mean |

meansByWat | Summarize PAWMAP data by watershed |

mergeStatInfo | Merge PAWMAP station information into a data frame. |

met.cod | Metric codes, names, units, etc for PAWMAP variables. |

norm.plot | Plot a variable and test for normality |

panel.cor | A Panel Function for Pairs to Add Correlation Coefficients |

plotBio_ByWat | Plot A GGplot jitter plot of a biological metric by watershed |

plotBio_InWat | Plot PAWMAP biological metrics within a selected watershed. |

plotCDF_byWat | Plot Empirical Cumulative Distribution Plots of PAWMAP data... |

plotDens | Plot Density of a Variable |

plotFishSpp | Plot PAWMAP Fish Species Composition Data. |

plotGGjitt_ByWat | Plot A GGplot Jitter plot by Watershed |

plotHab_ByWat | Plot PAWMAP habitat data by watershed. |

plotHab_inwat | Plot PAWMAP Habitat Data within a selected watershed. |

plotIbi_InWat | Plot PAWMAP Fish Data within a selected watershed. |

plotRespVsPred | Plot Correlations of Predictors vs. a Response |

plotSubstrate | Plot PAWMAP substrate data |

plotWQ_ByWat | Plot PAWMAP water quality data by watershed. |

plotWQ_inwat | Plot PAWMAP Water Quality Data within a selected watershed. |

runFishIbi | Get Fish Index of Biotic Integrity scores |

runMetMixMod | Run a Mixed Model for Metals and TSS in Streams. |

saveMMMranEff | Save and Plot the Random Effects from a Mixed Model. |

statByStation | Calculate summary statistic by station |

stationInfo | Information on PAWMAP Monitoring Stations. |

stLook | Look up information on a station by number |

substCritList | List stations exceeding substrate criteria |

substCritStat | Compile total exceedances of substrate criteria by watershed |

tallyFishSpp | Tally PAWMAP Fish Species Composition Data. |

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