addCycle | Calculate the PAWMAP cycle based on sampling date |
addFishTraits | Add fish traits to a data frame of fish counts |
collidev | Allow vertical dodging in ggplot |
create_Panel_Table | Create table of PAWMAP sampling years, panels and cycles |
dot-simpleCap | A Set of Miscellaneous Functions for Working with Data. |
dropAmphibs | Drop Amphibians from a data frame of fish names |
fish.traits | Fish traits table |
fitStats | Create text summarizing regression fit |
formSubstrate | Load and format PAWMAP substrate data |
gmean | Calculate the geometric mean |
loadPMdat | Load PAWMAP data |
meansByWat | Summarize PAWMAP data by watershed |
mergeStatInfo | Merge PAWMAP station information into a data frame. |
met.cod | Metric codes, names, units, etc for PAWMAP variables. |
norm.plot | Plot a variable and test for normality |
panel.cor | A Panel Function for Pairs to Add Correlation Coefficients |
plotBio_ByWat | Plot A GGplot jitter plot of a biological metric by watershed |
plotBio_InWat | Plot PAWMAP biological metrics within a selected watershed. |
plotCDF_byWat | Plot Empirical Cumulative Distribution Plots of PAWMAP data... |
plotDens | Plot Density of a Variable |
plotFishSpp | Plot PAWMAP Fish Species Composition Data. |
plotGGjitt_ByWat | Plot A GGplot Jitter plot by Watershed |
plotHab_ByWat | Plot PAWMAP habitat data by watershed. |
plotHab_InWat | Plot PAWMAP Habitat Data within a selected watershed. |
plotIbi_InWat | Plot PAWMAP Fish Data within a selected watershed. |
plotRespVsPred | Plot Correlations of Predictors vs. a Response |
plotSubstrate | Plot PAWMAP substrate data |
plotWQ_byCycle | Plot PAWMAP water quality data by watershed. |
plotWQ_byWat | Plot PAWMAP water quality data by watershed. |
plotWQ_InWat | Plot PAWMAP Water Quality Data for each station within a... |
pos_fillv | Stack overlapping intervals and set height to 1. Assumes that... |
position_dodgev | Adjust position by dodging overlaps to the side. |
pos_stackv | Stack overlapping intervals. Assumes that each set has the... |
queryFishEvents | Query number of PAWMAP fish surveys and transects at each... |
removeNotFished | Remove fish surveys that were not attempted |
runFishIbi | Calculate Fish Index of Biotic Integrity scores |
selectFishFields | Choose & format the fields to keep in fish survey data |
statByStation | Calculate summary statistic by station |
stationInfo | Information on PAWMAP Monitoring Stations. |
std.lns | Standard values for plotting |
stLook | Look up information on a station by number |
substCritList | List stations exceeding substrate criteria |
substCritStat | Compile total exceedances of substrate criteria by watershed |
sumFishSurvTrans | Summarize total fish surveys and transects |
tallyFishSpp | Tally PAWMAP Fish Species Composition Data. |
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