plotFishSpp: Plot PAWMAP Fish Species Composition Data.

In PDXChris/pmtools: Tools for Working with PAWMAP Data

Plot PAWMAP Fish Species Composition Data.

Description

Plot PAWMAP Fish Species Composition Data.

Usage

plotFishSpp(
  dfm,
  speciesIn = "common_name",
  sppLook = "Common_Name",
  by = "row",
  countFields = c("totNum", "numSurv"),
  limitLength = TRUE,
  quiet = FALSE,
  ...
)

Arguments

dfm	The data frame containing fish counts
speciesIn	The field in dfm that identifies species
sppLook	Look up species traits by: "Common_Name" (default) or "Species_Name"
by	Are the data formatted one row per individual ('row'), or counts per species ('counts')?
countFields	Only used if by='count'. A vector of length 2 indicating the fields for total number of each species captured first, and the number of surveys on which they were captured second.
limitLength	Should the number of species plotted be limited to the top 25? (to prevent an overcrowded plot)
quiet	should warnings be suppressed?
...	Additional arguments passed to tallyFishSpp

Value

A tornado plot of fish species presence (number of surveys on which species was captured), and abundance (total number of individuals captured)

PDXChris/pmtools documentation built on Feb. 4, 2025, 11:14 a.m.