#### CODE TO LOAD & TABLE-LEVEL QA STAGE.MCARE_DME_CLAIMS
# Eli Kern, PHSKC (APDE)
#
# 2019-12
### Run from master_mcare_full_union script
# https://github.com/PHSKC-APDE/claims_data/blob/main/claims_db/db_loader/mcare/master_mcare_full_union.R
#### Load script ####
load_stage.mcare_dme_claims_f <- function() {
### Run SQL query
odbc::dbGetQuery(db_claims, glue::glue_sql(
"--Code to load data to stage.mcare_dme_claims
--Union of single-year files
--Eli Kern (PHSKC-APDE)
--2019-12
--Run time: 8 min
--------------------------------
--------------------------------
--Shuva Dawadi
--2/10/2020
--Adding code block for 2017 file
insert into PHClaims.stage.mcare_dme_claims_load with (tablock)
--2015 data
select
--top100
bene_id as id_mcare
,clm_id as claim_header_id
,clm_from_dt as first_service_date
,clm_thru_dt as last_service_date
,nch_clm_type_cd as claim_type
,carr_clm_pmt_dnl_cd as denial_code
,rfr_physn_npi as provider_referring_npi
,prncpal_dgns_cd as dx01
,prncpal_dgns_vrsn_cd as dx01_ver
,icd_dgns_cd1 as dx02
,icd_dgns_vrsn_cd1 as dx02_ver
,icd_dgns_cd2 as dx03
,icd_dgns_vrsn_cd2 as dx03_ver
,icd_dgns_cd3 as dx04
,icd_dgns_vrsn_cd3 as dx04_ver
,icd_dgns_cd4 as dx05
,icd_dgns_vrsn_cd4 as dx05_ver
,icd_dgns_cd5 as dx06
,icd_dgns_vrsn_cd5 as dx06_ver
,icd_dgns_cd6 as dx07
,icd_dgns_vrsn_cd6 as dx07_ver
,icd_dgns_cd7 as dx08
,icd_dgns_vrsn_cd7 as dx08_ver
,icd_dgns_cd8 as dx09
,icd_dgns_vrsn_cd8 as dx09_ver
,icd_dgns_cd9 as dx10
,icd_dgns_vrsn_cd9 as dx10_ver
,icd_dgns_cd10 as dx11
,icd_dgns_vrsn_cd10 as dx11_ver
,icd_dgns_cd11 as dx12
,icd_dgns_vrsn_cd11 as dx12_ver
,icd_dgns_cd12 as dx13
,icd_dgns_vrsn_cd12 as dx13_ver
,getdate() as last_run
from PHClaims.load_raw.mcare_dme_claims_k_15
--2016 data
union
select
--top100
bene_id as id_mcare
,clm_id as claim_header_id
,clm_from_dt as first_service_date
,clm_thru_dt as last_service_date
,nch_clm_type_cd as claim_type
,carr_clm_pmt_dnl_cd as denial_code
,rfr_physn_npi as provider_referring_npi
,prncpal_dgns_cd as dx01
,prncpal_dgns_vrsn_cd as dx01_ver
,icd_dgns_cd1 as dx02
,icd_dgns_vrsn_cd1 as dx02_ver
,icd_dgns_cd2 as dx03
,icd_dgns_vrsn_cd2 as dx03_ver
,icd_dgns_cd3 as dx04
,icd_dgns_vrsn_cd3 as dx04_ver
,icd_dgns_cd4 as dx05
,icd_dgns_vrsn_cd4 as dx05_ver
,icd_dgns_cd5 as dx06
,icd_dgns_vrsn_cd5 as dx06_ver
,icd_dgns_cd6 as dx07
,icd_dgns_vrsn_cd6 as dx07_ver
,icd_dgns_cd7 as dx08
,icd_dgns_vrsn_cd7 as dx08_ver
,icd_dgns_cd8 as dx09
,icd_dgns_vrsn_cd8 as dx09_ver
,icd_dgns_cd9 as dx10
,icd_dgns_vrsn_cd9 as dx10_ver
,icd_dgns_cd10 as dx11
,icd_dgns_vrsn_cd10 as dx11_ver
,icd_dgns_cd11 as dx12
,icd_dgns_vrsn_cd11 as dx12_ver
,icd_dgns_cd12 as dx13
,icd_dgns_vrsn_cd12 as dx13_ver
,getdate() as last_run
from PHClaims.load_raw.mcare_dme_claims_k_16
--2017 data
union
select
--top100
bene_id as id_mcare
,clm_id as claim_header_id
,clm_from_dt as first_service_date
,clm_thru_dt as last_service_date
,nch_clm_type_cd as claim_type
,carr_clm_pmt_dnl_cd as denial_code
,rfr_physn_npi as provider_referring_npi
,prncpal_dgns_cd as dx01
,prncpal_dgns_vrsn_cd as dx01_ver
,icd_dgns_cd1 as dx02
,icd_dgns_vrsn_cd1 as dx02_ver
,icd_dgns_cd2 as dx03
,icd_dgns_vrsn_cd2 as dx03_ver
,icd_dgns_cd3 as dx04
,icd_dgns_vrsn_cd3 as dx04_ver
,icd_dgns_cd4 as dx05
,icd_dgns_vrsn_cd4 as dx05_ver
,icd_dgns_cd5 as dx06
,icd_dgns_vrsn_cd5 as dx06_ver
,icd_dgns_cd6 as dx07
,icd_dgns_vrsn_cd6 as dx07_ver
,icd_dgns_cd7 as dx08
,icd_dgns_vrsn_cd7 as dx08_ver
,icd_dgns_cd8 as dx09
,icd_dgns_vrsn_cd8 as dx09_ver
,icd_dgns_cd9 as dx10
,icd_dgns_vrsn_cd9 as dx10_ver
,icd_dgns_cd10 as dx11
,icd_dgns_vrsn_cd10 as dx11_ver
,icd_dgns_cd11 as dx12
,icd_dgns_vrsn_cd11 as dx12_ver
,icd_dgns_cd12 as dx13
,icd_dgns_vrsn_cd12 as dx13_ver
,getdate() as last_run
from PHClaims.load_raw.mcare_dme_claims_k_17;",
.con = db_claims))
}
#### Table-level QA script ####
qa_stage.mcare_dme_claims_qa_f <- function() {
#load expected counts from YAML file
table_config <- yaml::yaml.load(httr::GET(config_url))
#confirm that row counts match expected
row_sum_union <- dbGetQuery(conn = db_claims, glue_sql(
"select count(*) as qa from PHClaims.stage.mcare_dme_claims_load;",
.con = db_claims))
if(table_config$row_count_expected == row_sum_union$qa) {
print("row sums match")
}
if(table_config$row_count_expected < row_sum_union$qa) {
print(paste0("union row sum more, single-year sum: ", table_config$row_count_expected, " , union sum: ", row_sum_union$qa))
}
if(table_config$row_count_expected > row_sum_union$qa) {
print(paste0("union row sum less, single-year sum: ", table_config$row_count_expected, " , union sum: ", row_sum_union$qa))
}
#confirm that col count matches expected
col_count <- dbGetQuery(conn = db_claims, glue_sql(
" select count(*) as col_cnt
from information_schema.columns
where table_catalog = 'PHClaims' -- the database
and table_schema = 'stage'
and table_name = 'mcare_' + 'dme_claims_load';",
.con = db_claims))
if(table_config$col_count_expected == col_count$col_cnt) {
print("col count matches expected")
} else {
print("col count does not match!!")
}
}
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