WriteH5AD: Write one assay to .h5ad

In PMBio/MuDataSeurat: MuData Serialization for Seurat

Write one assay to .h5ad

Description

This function writes the data of one of the assays (modalities) of a Seurat object into an .h5ad file. The behavior of this function if NAs are present is undefined.

Usage

WriteH5AD(object, file, assay = NULL, overwrite = TRUE)

## S4 method for signature 'Seurat'
WriteH5AD(object, file, assay = NULL, overwrite = TRUE)

Arguments

object	Seurat object.
file	Path to the .h5ad file.
assay	Assay to write; can be omitted if there is a single assay in the object.
overwrite	Boolean value to indicate if to overwrite the file if it exists (TRUE by default).

Details

The following slots are saved: count matrices ('@counts', '@scale.data' and '@data'), '@metadata', '@reductions', '@feature.loadings', '@graphs'.

PMBio/MuDataSeurat documentation built on Nov. 21, 2023, 7:31 a.m.