WriteH5MU: Create an .h5mu file with data from a 'Seurat' object

In PMBio/MuDataSeurat: MuData Serialization for Seurat

Create an .h5mu file with data from a Seurat object

Description

Save Seurat object to .h5mu file. The behavior of this function if NAs are present is undefined.

Usage

WriteH5MU(object, file, overwrite = TRUE)

## S4 method for signature 'Seurat'
WriteH5MU(object, file, overwrite = TRUE)

Arguments

object	Seurat object.
file	Path to the .h5mu file.
overwrite	Boolean value to indicate if to overwrite the file if it exists (TRUE by default).

Details

The following slots are saved: count matrices ('@counts', '@scale.data' and '@data'), '@metadata', '@reductions', '@feature.loadings', '@graphs'.

PMBio/MuDataSeurat documentation built on Nov. 21, 2023, 7:31 a.m.