PMBio/cardelino: Clone Identification from Single Cell Data

Methods to infer clonal structure for a population of cells using single-cell RNA-seq data (and possibly other data modalities). Methods to assign cells to inferred clones and explore differences in gene expression between clones.

Getting started

Package details

Bioconductor views GeneExpression RNASeq Sequencing SingleCell Software Transcriptomics Visualization
MaintainerDavis McCarthy <>
LicenseGPL (>= 3)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
PMBio/cardelino documentation built on July 6, 2021, midnight