assign_scores: Scoring the simulation in assignment of singlets and doublets

In PMBio/cardelino: Clone Identification from Single Cell Data

Scoring the simulation in assignment of singlets and doublets

Description

Scoring the simulation in assignment of singlets and doublets

Usage

assign_scores(prob, I_sim, cutoff = seq(0, 1, 0.001))

Arguments

prob	Probability matrix for each cell to each component
I_sim	The true identity of assignment from simulation
cutoff	A list of cutoffs from 0 to 1

Value

A list with components: df_sg, the recall/precision data.frame calculated by multiPRC(), AUC_sg, the AUC calculated by multiPRC(), df_db, the recall/precision data.frame calculated by binaryPRC() and AUC_db the AUC calculated by binaryPRC(). Note that multiPRC() is run on a multiclass version of the problem and binaryPRC is run on a binarised version of the problem.

PMBio/cardelino documentation built on Nov. 21, 2022, 4:52 a.m.