Example_romics_data: Example_romics_data
In PNNL-Comp-Mass-Spec/RomicsProcessor: omics-oriented package for reproducible and sharable data processing pipelines
Example_romics_data R Documentation
Example_romics_data
Description
This example is containing proteomics results of Bacillus cereus grown in 4 different media:
- Luria Bertani (lb)
- modified AOAC (maoac)
- autoclaved soil extract from INRAE avignon France (soil)
- autloclaved zucchinni puree (zucchinni)
Usage
Example_romics_data
Format
A data frame with 2459 rows and 13 columns
Details
All raw data are available using on MassIVE under the identifier MSV000085696 (ftp://massive.ucsd.edu/MSV000085696/)
The data was analyzed in MaxQuant and the iBAQ data was extracted using the function extractMaxQuant() on the proteinGroup.txt file
The first column contain protein identifiers while the other columns are the iBAQ intensities for the different samples
The row represent the different proteins identified.
PNNL-Comp-Mass-Spec/RomicsProcessor documentation built on March 18, 2023, 5:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| Example_romics_data | R Documentation |
Example_romics_data
Description
This example is containing proteomics results of Bacillus cereus grown in 4 different media: - Luria Bertani (lb) - modified AOAC (maoac) - autoclaved soil extract from INRAE avignon France (soil) - autloclaved zucchinni puree (zucchinni)
Usage
Example_romics_data
Format
A data frame with 2459 rows and 13 columns
Details
All raw data are available using on MassIVE under the identifier MSV000085696 (ftp://massive.ucsd.edu/MSV000085696/) The data was analyzed in MaxQuant and the iBAQ data was extracted using the function extractMaxQuant() on the proteinGroup.txt file The first column contain protein identifiers while the other columns are the iBAQ intensities for the different samples The row represent the different proteins identified.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.