API for PNNL-CompBio/amlresistancenetworks
Calculates networks that lead to AML resistance to drugs
| Global functions | |
|---|---|
| buildFeatureMatrix | Man page Source code |
| clusterDrugFamilyEfficacy | Man page Source code |
| clusterSingleDrugEfficacy | Man page Source code |
| computeAUCCorVals | Man page Source code |
| computeDiffExByDrug | Man page Source code |
| computeFoldChangePvals | Man page Source code |
| computeGSEA | Man page Source code |
| computeKSEA | Man page Source code |
| computePhosphoChanges | Man page Source code |
| computePhosphoNetwork | Man page Source code |
| computeProteinNetwork | Man page |
| doRegularGo | Man page Source code |
| doRegularKin | Man page Source code |
| drugMolLogReg | Man page Source code |
| drugMolLogRegEval | Man page Source code |
| drugMolRandomForest | Man page Source code |
| drugMolRegression | Man page Source code |
| drugMolRegressionEval | Man page Source code |
| findCandidates | Man page Source code |
| getCoClusteredProteins | Man page Source code |
| getCorrelatedProteins | Man page Source code |
| getCytokineSensData | Man page Source code |
| getFeaturesFromString | Man page Source code |
| getFeaturesFromStringdf | Man page Source code |
| getTimeCourseData | Man page Source code |
| getTimeCourseMetadata | Source code |
| getTimeCoursePhosphoData | Source code |
| limmaTwoFactorDEAnalysis | Man page Source code |
| manualDEAnalysis | Man page Source code |
| mapPhosphoToKinase | Man page Source code |
| miniForest | Man page Source code |
| miniForestEval | Man page Source code |
| miniLogR | Man page Source code |
| miniLogREval | Man page Source code |
| miniReg | Man page Source code |
| miniRegEval | Man page Source code |
| plotAllAUCs | Man page |
| plotCorrelationEnrichment | Man page Source code |
| plotCorrelationsByDrug | Man page Source code |
| plotGSEA | Man page |
| plotKinDat | Man page Source code |
| plotOldGSEA | Man page Source code |
| plotProtsByMetric | Man page Source code |
| plotSingleProtein | Man page Source code |
| querySynapseTable | Man page Source code |
| readAndTidyMetadata | Man page Source code |
| readAndTidyPhosphoProtMeasures | Man page Source code |
| readAndTidyProtMeasures | Man page Source code |
| readAndTidyQuizMetadata | Man page Source code |
| readAndTidyQuizPhosphoProtMeasures | Man page Source code |
| readAndTidyQuizProtMeasures | Man page Source code |
| readAndTidySensMetadata | Man page Source code |
| readAndTidySensPhosMeasures | Man page Source code |
| readAndTidySensProtMeasure | Man page Source code |
| readAndTidyUncorrectedQuizPhosphoMeasures | Man page Source code |
| reverselog_trans | Man page Source code |
| synTableStore | Man page Source code |
| synTableUpdate | Man page Source code |
| synapseLogin | Man page Source code |
| synapseStore | Man page Source code |
| testData | Man page |
| updateCytokinePhospho | Source code |
