drugMolLogRegEval: drugMolLogRegEval Computes logistic regression and evaluates...

In PNNL-CompBio/amlresistancenetworks: Calculates networks that lead to AML resistance to drugs

drugMolLogRegEval Computes logistic regression and evaluates on test dataset for a particular aucThreshold

Description

drugMolLogRegEval Computes logistic regression and evaluates on test dataset for a particular aucThreshold

Usage

drugMolLogRegEval(
  clin.data,
  mol.data,
  mol.feature = "Gene",
  mol.feature.name,
  test.clin,
  test.mol,
  category = "Condition",
  aucThresh = 100
)

Arguments

clin.data	AUC data for training
mol.data	molecular data table
mol.feature	list of molecular features to evaluate
mol.feature.name	list of molecular feature names
test.clin	AUC data for testing
test.mol	molecular data for testing
category	Column in AUC data to use
aucThresh	Threshold to call sample sensitive vs. resistant

PNNL-CompBio/amlresistancenetworks documentation built on Feb. 8, 2025, 11:27 a.m.