insertResults: Insert results

In PROBIC/tigrebrowser-writer: 'tigreBrowser' Database Writer

Description

Insert results

Usage

insertResults(db, experimentName, regulatorName, figurePath, loglikelihoods,
  baselineloglikelihoods = NA, experimentDesc = "", loopVariable = 2,
  modelTranslation = FALSE, numberOfParameters = NA, parameterNames = NA,
  experimentProducer = "", experimentTimestamp = "", parameters = NA)

Arguments

db	Database object created by initializeDb
experimentName	Experiment name
regulatorName	Regulator name (more detailed experiment identifier)
figurePath	URL path to figures
loglikelihoods	A vector of log-likelihoods of elements identified by names
baselineloglikelihoods	A vector of baseline log-likelihoods of elements identified by names (optional)
experimentDesc	Optional experiment description
loopVariable	Optional: Loop variable (1=regulator, 2=target (default))
modelTranslation	Optional: For gene regulation models, is translation modelled
numberOfParameters	Optional: Number of parameters
parameterNames	Optional: Parameter names
experimentProducer	Optional: Experiment producer (string)
experimentTimestamp	Optional: Experiment timestamp (string)
parameters	Optional: A vector of parameter values for the model

Value

An updated database object db

Examples

  db <- initializeDb("", "My Dataset")
  logl <- c(-4.0, -2.0, 0.0)
  names(logl) <- c("A", "B", "C")
  baselogl <- c(1.0, -1.0, 4.0)
  names(baselogl) <- names(logl)
  db <- insertResults(db, "testexperiment", "testregulator", "",
                     logl, baselineloglikelihoods=baselogl)
  closeDb(db)

PROBIC/tigrebrowser-writer documentation built on May 7, 2019, 11:53 p.m.