plot.vast.enviro.response: Plot estimated catchability effects. Currently assumes only...

In PacificCommunity/ofp-sam-vast-utils: Utility functions for applying VAST to analysis of WCPFC tuna fisheries data.

Description

Plot estimated catchability effects. Currently assumes only one set of interactions and no splines on catchability.

Usage

plot.vast.enviro.response(
  vast.output,
  enviro.formula,
  report.enviro,
  save.dir,
  save.name
)

Arguments

vast.output	The output from a fit.vast function call
enviro.formula	The formula for the environmental covariates (abundance) that was passed to fit.vast as a part of the enviro argument
report.enviro	Named list ('mean', 'sd', 'min', and 'max') where each element of the list is a vector of length covariates in enviro.formula containing the appropriate metric. This is assuming that the environmental covariate was scaled to mean 0 and sd 1 prior to passing to fit.vast.
save.dir	Path to the directory where the outputs will be saved
save.name	Name stem for the output, useful when saving many model outputs in the same directory

PacificCommunity/ofp-sam-vast-utils documentation built on Nov. 2, 2020, 7:05 p.m.