plot.vast.q.estimates: Plot estimated catchability effects. Currently assumes only...
In PacificCommunity/ofp-sam-vast-utils: Utility functions for applying VAST to analysis of WCPFC tuna fisheries data.
View source: R/plot.vast.q.estimates.r
Description
Plot estimated catchability effects. Currently assumes only one set of interactions and no splines on catchability.
Usage
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plot.vast.q.estimates(
vast.output,
coef.names = c("flg.grp", "syn.hbf.imb"),
level.names = c("Flag group", "HBF (pred)"),
error.structure = "dln",
save.dir,
save.name
)
Arguments
vast.output
The output from a fit.vast function call
coef.names
Character vector of the factors used to create Q_ik
level.names
Character vector of how to name the factors in the plot
error.structure
Character string denoting the error structure used to fit the model. This is needed to backtransform the parameter estimates.
save.dir
Path to the directory where the outputs will be saved
save.name
Name stem for the output, useful when saving many model outputs in the same directory
PacificCommunity/ofp-sam-vast-utils documentation built on Nov. 2, 2020, 7:05 p.m.
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View source: R/plot.vast.q.estimates.r
Description
Plot estimated catchability effects. Currently assumes only one set of interactions and no splines on catchability.
Usage
1 2 3 4 5 6 7 8 | plot.vast.q.estimates(
vast.output,
coef.names = c("flg.grp", "syn.hbf.imb"),
level.names = c("Flag group", "HBF (pred)"),
error.structure = "dln",
save.dir,
save.name
)
|
Arguments
vast.output |
The output from a fit.vast function call |
coef.names |
Character vector of the factors used to create Q_ik |
level.names |
Character vector of how to name the factors in the plot |
error.structure |
Character string denoting the error structure used to fit the model. This is needed to backtransform the parameter estimates. |
save.dir |
Path to the directory where the outputs will be saved |
save.name |
Name stem for the output, useful when saving many model outputs in the same directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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