dot-scoreByTranscripts: Ranking matching transcripts

.scoreByTranscriptsR Documentation

Ranking matching transcripts

Description

Ranking matching transcripts

Usage

.scoreByTranscripts(genes, transcripts.col)

Arguments

genes

TxDb object of genes. hg19 and hg38 are supported in the current version.

transcripts.col

A vector of transcript names.

Details

This is an internal function which returns overlapping transcript names with ranking scores. The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.

Value

A dataframe with two columns, tx_name and score.


PapenfussLab/svaRetro documentation built on June 15, 2022, 1:42 a.m.